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Background information

Articles

  • Berger DK, Crampton B, Hein I, Vos W (2006) Screeing cDNA libraries on glass slide microarrays. In: Microarrays: Methods and Protocols (2nd Ed)(Editor J.Brampal), Series: Methods in Molecular Biology (Series Editor J.M.Walker), Humana Press, Totowa, New Jersey, USA (in press).
  • Oelofse D, Dubery IA, Meyer R, Arendse MS, Gazendam I and Berger DK (2006). Apple polygalacturonase inhibiting protein1 expressed in transgenic tobacco inhibits polygalacturonases from fungal pathogens of apple and the anthracnose pathogen of lupins. Phytochemistry, 67, 255-263.
  • S. Naidoo, K.J. Denby & D.K. Berger. 2005. Microarray experiments: considerations for experimental design. South African Journal of Science 101 (July/August):347-354.
  • Dobbin K. and Simon R.M. (2003). Experimental Design of DNA Microarray Experiments. Biotechniques. 34, 16-21
    Saeed, Quackenbush et al (2003). TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378
  • Dobbin K. and Simon R.M. (2003). Experimental Design of DNA Microarray Experiments. Biotechniques. 34, 16-21
  • Saal et al 2002 Bioarray Software environment: a platform for management and analysis of microarray data Genomebiology 3-8-software0003
  • Quackenbush J (2001) Computational analysis of microarray data. Nature Genetics 2(6) 418 -427
  • Pritchard CC et al. (2001) Project normal: Defining normal variance in mouse gene expression. PNAS 98:13266-13271
  • Tseng GC et al. (2001) Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Research 29: No12 2549-2557
  • Wildsmith SE et al. (2001) Maximisation of signal derived from cDNA Microarrays. Biotechniques 30: 202-208
    Wu TD (2001) Analysing gene expression data from DNA microarrays to identify candidate genes. J. Pathology 195:53-65
  • Yue H et al. (2001) An evaluation of the performance of cDNA microarray for detecting changes in global mRNA expression. Nuceic Acids Research 29: No 8 e41
  • Hegde P et al. (2000) A concise guide to cDNA Microarray analysis. Biotechniques 29(3): 548-562
  • Lee M-LT et al. (2000) Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridisations. PNAS 97:9834-9839

Website links

  • Excellent resource of links to microarray-related websites
  • EBI: Elements of biology and microarrays
  • NCBI: A great broad-base view of the technology
  • Another good overview of the technology
  • University of Lausanne: Arabidopsis microarray project, protocols
  • University of Stanford: AFGC, great protocols, data analysis tools, database
  • University of Ontario: Probe labeling & hybridization protocols
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